PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_1537629B3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 458aa    MW: 49871.3 Da    PI: 5.0525
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_1537629B3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33201112101
                            HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
           HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                            Fl k+ye+++d++++ ++sws ++ +sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+         weF +++F k
  Traes_6AS_1537629B3.1  20 FLLKTYEMVDDPATDAVVSWSdASDTSFVVWNSPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFGNEYFVK 98 
                            9********************76679****************************************999.........********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  89 gkkellekikrkk 101
                            g+k+ll++i r+k
  Traes_6AS_1537629B3.1  99 GQKHLLKNIYRRK 111
                            ***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.24E-3216110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-3516110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-5716110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2920110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEGSGAVGAR GGGGGGPAPF LLKTYEMVDD PATDAVVSWS DASDTSFVVW NSPEFAARLL  60
PAYFKHSNFS SFIRQLNTYG FRKIDPERWE FGNEYFVKGQ KHLLKNIYRR KPIHSHSHQP  120
GALPDNERSF FEDEIDRLAR EKANLQAELW KSKQQESGTM FQIEALERRA VDMEQRQGKM  180
IAFLQQASKN PHFVSKLVKM AEASSMFADA LHKKRRLSGL DYAVEATETA SFCDDHSATS  240
RQEMGNLLNQ HFSDKLKLGL CSAAAESNLV TLSTQSSHED NGSPHGRHPP VHDGMGTGCL  300
PLVPQIMELS DTGTSICPSK SSFFAPAVND EGLSPCHLSL TLASCSMDVD RGQASNADGS  360
TTINEGSDNP PEATATAMGG NPKASVDAGT AEAPTPREDT WVAAEPAAPV KANDNFWEQF  420
LTERPGDASS GPRDPSMDKE QTEGGGKDDR EVTEQLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D5e-221111017129Heat shock factor protein 1
5d5v_B5e-221111017129Heat shock factor protein 1
5d5u_B5e-221111017129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3555640.0AK355564.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022K17.
GenBankAK3575040.0AK357504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574986.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLW5GC410.0W5GC41_WHEAT; Uncharacterized protein
STRINGMLOC_50620.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-104HSF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]